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Publication ethics · action · PUB-09

Connect a preprint to a journal submission

In brief: Read the target journal’s policy and clear rights before posting. Give the preprint a persistent identifier, label it as not peer reviewed, and disclose it in both the journal form and cover letter. After acceptance, link the preprint record to the version of record without uploading a publisher PDF unless the agreement permits it. Material corrections or withdrawal must remain visible across the version chain.

Version and disclosure checkSources reviewed 4 September 2026

Public does not mean peer reviewed

A preprint enables rapid access, discussion and an early public record. It is nevertheless a manuscript version rather than the journal’s version of record. Readers should be able to see its review status and locate later versions, especially when conclusions change.

Rules differ among journals, disciplines and servers. Some journals welcome relevant preprints; others limit eligible servers, timing or publicity. Save the policy that applied when you decided to post, and ask the editorial office about genuine ambiguity. General custom cannot override the selected journal’s current terms.

Resolve people, sensitive content and permissions

All authors should approve the actual file, byline order, licence and public posting. Review confidential data, identifiable participants, patents, embargoes and collaborator agreements. Removing a preprint later cannot guarantee that downloaded copies disappear.

Check every third-party figure, table, map and instrument. Permission for use in a journal may not include a public server. Record funding and competing interests under the applicable rules. Freeze the posted bytes and preserve their checksum, identifier and posting receipt.

Authority asset: version and disclosure check

Controls from public manuscript to version of record
ControlPreprintJournal submissionAfter publication
IdentityTitle, authors, date, DOI/IDManuscript ID and approved fileArticle DOI and version of record
StatusNot peer reviewed; version/datePreprint declared to editorAccepted/published link added
PolicyTarget journal and server checkedCurrent rule checked againPermitted repository version known
RightsLicence for all content clearedPublishing agreement reviewedNo unauthorised publisher PDF
ChangesPosted file frozenMaterial differences recordedNew version or correction note
RelationshipPersistent identifier retainedPreprint cited or linkedReciprocal links where supported

Store the completed sheet with the policy copy, exact preprint file and submission receipt.

Disclose the preprint during submission

Answer every prior-dissemination question completely. In the cover letter, give the server, persistent identifier, posting date and relationship to the submitted manuscript. Identify material changes in authorship, data, analysis or conclusion. Provide the earlier version rather than expecting an editor to discover and compare it unaided.

The manuscript itself may require a citation or availability statement. Use the server’s recommended citation and retain its version label. For anonymised review, follow the journal’s instructions. Do not improvise concealment where the editor separately requires full disclosure.

A preprint and submission are normally versions of one work, not two independent research papers. Where several papers emerge from shared data, use the salami-slicing matrix. For repeated passages, apply the text-recycling audit.

Update the chain after acceptance

When an article is accepted or published, add the version-of-record DOI and status to the preprint record if the server supports it. Do not assume that the final publisher PDF can be uploaded. The agreement and journal policy determine whether the preprint, accepted manuscript or another version may remain in a repository.

Material differences deserve a version note. Copyediting need not be catalogued line by line, but a changed dataset, analysis or conclusion must not remain hidden from preprint readers. Persistent identifiers are preferable to fragile links.

If the journal article is corrected or retracted, update the preprint context. A public manuscript should not continue as an apparently unqualified alternative when its central result is no longer reliable. Preserve history through version, comment or withdrawal notices rather than silent deletion.

Common breaks in the version chain

  • Posting without approval from every author.
  • Checking journal policy only after dissemination.
  • Confusing rights in your text with rights in third-party material.
  • Omitting the preprint from submission questions.
  • Leaving preprint and article online without status links.
  • Uploading a publisher PDF despite different archiving rights.
  • Failing to propagate a material correction.

Check bibliographic databases and author profiles after indexing. A missing relation can leave the preprint appearing to be the latest version or create misleading duplicate records. Keep correction requests to the server, journal and metadata service separate, and do not alter scientific content merely to tidy a profile.

Maintain one readable version register

For each stage, record filename, checksum, status, date, responsible person, persistent identifier and destination. A screenshot is not enough when it cannot be tied to the exact file. Preserve editorial confirmation where an unusual preprint status was approved.

The publication ethics hub gathers related submission guidance. The single foundation route is the evidence-review guide. A simple chain should remain readable: preprint ID, submitted file, manuscript ID, accepted version and version of record.

A concise disclosure could state: “An earlier version of this manuscript was posted on [date] at [DOI/URL]. The submitted version [lists material changes or states that the principal analysis is unchanged]. All authors approved this submission.” Replace brackets with verified facts and adapt the wording to journal policy.

Official and institutional foundations

  1. ICMJE: Preprints and Journals – responsibilities of authors, journals and readers.
  2. COPE: Preprints – institutional discussion of editorial and ethical issues.
  3. Crossref: Relationships between research objects – metadata links between versions and outputs.

Sources reviewed 4 September 2026.